Profile

Senior Software Engineer with 8+ years of experience building data-intensive platforms in the bioinformatics domain. I specialize in scalable data architectures and developer tooling, with strong ownership of production systems — including authoring the majority of a complex scientific platform. I bridge research and engineering by turning complex data workflows into reliable, maintainable systems.

Core Competencies

• Scalable data platforms (distributed systems, multi-database architectures)

• Bioinformatics and scientific software development

• Full-stack development (TypeScript, Python, Angular, React)

• Knowledge graphs and data modeling (Neo4j, ArangoDB)

• Cloud infrastructure (Kubernetes, Azure, Google Cloud)

• Developer tooling and workflow optimization (Nextflow ecosystem)

Professional Experience

Senior Software Engineer DTU Biosustain
Mar 2025 – Present, Copenhagen

• Designed systems for unified data storage, access control, and provenance tracking.

• Improved reproducibility of research workflows through data architecture design.

• Maintained and scaled cloud applications on Azure.

• Introduced CI/CD pipelines improving reliability and deployment quality.

Software Engineer Novo Nordisk Foundation Center for Biosustainability
Jun 2022 – Dec 2024

• Core contributor to Lifelike platform.

• Authored 7̃5% of the codebase across frontend, backend, and services.

• Built full-stack system (Angular + TypeScript, Python + Flask).

• Designed integrations across PostgreSQL, Neo4j, ArangoDB, Redis, and Elasticsearch.

• Developed data processing and LLM-based services supporting scientific workflows.

Software Engineer (On-site) UC San Diego
Feb 2022 – May 2022

• Collaborated with distributed teams on platform development and integration.

Research Assistant → Software Engineer DTU Biosustain
Oct 2016 – May 2022

• Developed full-stack features for synthetic biology platform.

• Led infrastructure evolution:

  • Docker Compose → Kubernetes migration

  • DigitalOcean → Google Cloud transition

• Maintained production systems supporting research workflows.

Open Source

nf-mapper — Nextflow tooling

• Improves structure and maintainability of workflow pipelines.

• Focused on developer experience and workflow introspection.

More projects: github.com/Skitionek

Publications

• PREFER: An Ontology for the PREcision FERmentation Community

• Reactome modified for tracing (ArangoDB version)

• Lifelike v0.98.1

Education

M.Sc. Electrical and Electronics Engineering (Double Degree)
KAIST & Technical University of Denmark (DTU) – 2018

B.Sc. Electrical Engineering
Gdańsk University of Technology & Karlsruhe Institute of Technology – 2016

Languages

English (Professional), Polish (Native)